HOW TO CITE iNEXT.beta3D | SOFTWARE NEEDED TO RUN iNEXT.beta3D IN R | HOW TO RUN iNEXT.beta3D: | DATA INPUT FORMAT | Species abundance data format | Species incidence raw data format | Phylogenetic tree format for PD | Species pairwise distance matrix format for FD | MAIN FUNCTION: iNEXTbeta3D() | Output of the main function iNEXTbeta3D() | GRAPHIC DISPLAYS: FUNCTION ggiNEXTbeta3D() | TAXONOMIC DIVERSITY (TD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 1: Abundance data with default sample sizes or coverage values | EXAMPLE 2: Incidence data with default sample sizes or coverage values (all assemblages as a whole) | EXAMPLE 3: Incidence data for every pair of assemblages with user-specified sample sizes or coverage values | PHYLOGENETIC DIVERSITY (PD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 4: Abundance data with default sample sizes or coverage values | FUNCTIONAL DIVERSITY (FD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 5: Abundance data with default sample sizes or coverage values | DATA INFORMATION: FUNCTION DataInfobeta3D() | License and feedback | References

How to cite | SOFTWARE NEEDED TO RUN iNEXT.3D IN R | HOW TO RUN iNEXT.3D: | DATA INPUT FORMAT | Species abundance/incidence data format | Phylogenetic tree format for PD | Species pairwise distance matrix format for FD | MAIN FUNCTION iNEXT3D(): RAREFACTION/EXTRAPOLATION | FUNCTION ggiNEXT3D(): GRAPHIC DISPLAYS | TAXONOMIC DIVERSITY (TD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 1: TD rarefaction/extrapolation for abundance data | EXAMPLE 2: TD rarefaction/extrapolation for incidence data | PHYLOGENETIC DIVERSITY (PD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 3: PD rarefaction/extrapolation for abundance data | EXAMPLE 4: PD rarefaction/extrapolation for incidence data | FUNCTIONAL DIVERSITY (FD): RAREFACTION/EXTRAPOLATION VIA EXAMPLES | EXAMPLE 5: FD rarefaction/extrapolation for abundance data | EXAMPLE 6: FD rarefaction/extrapolation for incidence data | FUNCTION DataInfo3D(): DATA INFORMATION | TAXONOMIC DIVERSITY (TD): Basic data information for abundance data | TAXONOMIC DIVERSITY (TD): Basic data information for incidence data | PHYLOGENETIC DIVERSITY (PD): Basic data information for abundance data | PHYLOGENETIC DIVERSITY (PD): Basic data information for incidence data | FUNCTIONAL DIVERSITY (FD): Basic data information for abundance data | FUNCTIONAL DIVERSITY (FD): Basic data information for incidence data | FUNCTION estimate3D(): POINT ESTIMATION | TAXONOMIC DIVERSITY (TD): point estimation | Example 7a: TD for abundance data with two target coverage values (93% and 97%) | Example 7b: TD for incidence data with two target coverage values (97.5% and 99%) | PHYLOGENETIC DIVERSITY (PD): point estimation | Example 8a: PD for abundance data with two target sample sizes (1500 and 3500) | Example 8b: PD for incidence data with two target coverage values (97.5% and 99%) | FUNCTIONAL DIVERSITY (FD): point estimation | Example 9a: FD for abundance data with two target coverage values (93% and 97%) | Example 9b: FD for incidence data with two target number of sampling units (30 and 70) | FUNCTION ObsAsy3D: ASYMPTOTIC AND OBSERVED DIVERSITY PROFILES | FUNCTION ggObsAsy3D(): GRAPHIC DISPLAYS OF DIVERSITY PROFILES | TAXONOMIC DIVERSITY (TD): q-profiles | Example 10a: TD q-profiles for abundance data | Example 10b: TD q-profiles for incidence data | PHYLOGENETIC DIVERSITY (PD): time-profiles and q-profiles | Example 11a: PD time-profiles for abundance data | Example 11b: PD q-profiles for incidence data | FUNCTIONAL DIVERSITY (FD): tau-profiles and q-profiles | Example 12a: FD tau-profiles for abundance data | Example 12b: FD q-profiles for abundance data | Example 12c: FD q-profiles for incidence data | License | References